Manuscript Pipeline

Programmatic research manuscript pipeline — automates figure/table regeneration and number traceability for LaTeX papers. Use when the user wants to: set up a reproducible paper build system, add or update figures/tables/numbers programmatically, wire data artifacts to LaTeX, create a "make paper" pipeline, connect experiment results to manuscript prose, ensure all numbers trace to source data, regenerate outputs from upstream changes, or automate any data-to-PDF paper workflow. Trigger on "update the paper with new results", "regenerate figures", "add a paper number", "wire this data to the manuscript", "make the paper reproducible", or structuring a paper repo so changi…